ACRONYMS¶
Partial List of the Acronyms in ChIP-related Work¶
ChIP-seq : chromatin immunoprecipitation (“ChIP”) coupled with high throughput sequencing
ChIP-chip or ChIP-on-chip : chromatin immunoprecipitation (“ChIP”) with DNA microarray (“chip”).
MeDip : Methylated DNA immunoprecipitation
MNase-seq : Chromatin digestion with micrococcal nuclease coupled wth high throughput sequencing
DNase-seq : high throughput sequencing of DNase I-digested DNA
CC-seq : Chemical cleavage coupled with high throughput sequencing
PE : Paired-end
SR : Single read
ChIA-PET : Chromatin Interaction Analysis by Paired-End Tag Sequencing
R-ChIP : robotic ChIP
Native ChIP (N-ChIP) vs. X-ChIP (typical ChIP where crosslinked)
ChIP-exo : chromatin immunoprecipitation (ChIP) combined with lambda exonuclease digestion followed by high-throughput sequencing
ORGANIC : high trhoughput sequencing of Occupied Regions of Genomes from Affinity-purified Naturally Isolated Chromatin
Digenome-seq: genome-wide profiling of CRISPR-Cas9 off-target sites
Bar-ChIP : chromatin immuno-precipitation followed by sequencing (ChIP-Seq), relying on the direct ligation of molecular barcodes to chromatin fragments